'ALPHAPICKLE is a programme for extracting the outputs of DeepMind's ALPHAFOLD protein prediction algorithm from the pickle (.pkl) file output.' 'AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known' 'AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal.' The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.' 'Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. Using the ATK interfaces, accessibility tools have full access to view and control running applications. 'ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. ASE uses it automatically when installed.' From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. 'ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. 'Apache Portable Runtime (APR) util libraries.'

'Apache Portable Runtime (APR) libraries.' 'AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 12.0'

'ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.' We believe that every product is a promise of something greater. 'ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world.

'An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.' 'The AMOS consortium is committed to the development of open-source whole genome assembly software' 'ACTC converts independent triangles into triangle strips or fans.' 'Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler' 'ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.

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